Heal the Gut With the IFM Elimination Diet

Approximately 4% of American adults have a food allergy, according to a 2017 study.1 More than 170 foods have been reported to cause reactions in the US, with eight major food allergens—milk, eggs, peanuts, tree nuts, wheat, soy, fish, and crustacean shellfish—responsible for most of the serious food allergy reactions.2 In the pediatric population, approximately 5% of children experience an anaphylactic food allergy.3

Food intolerances and sensitivities are much more common than allergies, with one study estimating a prevalence of 15-20%.4 Many food intolerances result from difficulty digesting a food, and they are typically less likely to be immunologically mediated. These food reactions can include enzyme deficiencies (like lactose intolerance) as well as carbohydrate malabsorption, or reactions to sulfites or food colorings.

Yet due to the diversity of symptoms and potential delay in response, food reactions can be challenging to diagnose. The gold standard for identifying food allergies is the elimination diet.3,5 IFM’s Elimination Diet is designed to clear the body of foods and chemicals that the patient may be sensitive or allergic to, support the microbiome, reduce inflammation, and increase phytonutrients. For patients with suspected food sensitivities, the Elimination Diet can aid in evaluation and treatment, leading to greater long-term health.

A caution is important, however: the Elimination Diet is not suitable for all patients. In particular, use caution when considering constitutionally weak patients, patients with acute illness, those with a history of disordered eating or an active eating disorder, and pregnant women.

IFM’s Elimination Diet & Reintroduction

IFM’s Elimination Diet is a short-term, three-week program that requires the patient to remove specific foods and categories of foods from their diet. With careful reintroduction, the IFM Elimination Diet helps patients identify the foods that may trigger their symptoms. For patients with anaphylactic, IgE-mediated food allergies, reintroduction should only occur in the presence of trained healthcare professionals. For food reactions including sensitivities and intolerances, reintroduction may often safely occur at home, after the Elimination Diet has reduced inflammation and stress on the body. 

In the following video, IFM educator Elizabeth Boham, MD, MS, RD, discusses the importance of a careful reintroduction of foods for patients without IgE-mediated allergies.

IFM educator Elizabeth Boham, MD, MS, RD, is board certified in family medicine and a registered dietitian with a strong background in Functional Medicine.

Following reintroduction, foods that continue to provoke symptoms (physical, mental, and emotional) are avoided for an additional three to six months, at which time reintroduction is attempted again. 

Clinicians trained in Functional Medicine who commonly use IFM’s Elimination Diet report that overall health improves when food triggers are removed, and often gastrointestinal symptoms and irritation go down. Successfully reintroducing foods is important, as eating the same few foods day after day does not provide the body with the full array of phytonutrients necessary for overall health. A diet with a large diversity of foods helps ensure that the body gets essential nutrients and is especially important for those who have digestive issues.


Research on the Elimination Diet for food sensitivities is still emerging, but results so far are quite promising. For instance, in a 2013 study evaluating the therapeutic potential of an elimination diet among migraine patients with irritable bowel syndrome (IBS), researchers found that the diet may effectively reduce symptoms from both disorders with possible positive impact on the quality of life of the patients.6 In one study with patients with diarrhea-dominant or mixed-type IBS, one-third responded positively to a gluten elimination diet.7

In patients with atopic dermatitis, research is accumulating that food sensitivities may play a role.8-11 Short-term elimination diets may benefit at least a subset of these patients.12


It is important to emphasize that elimination diets are designed to be used short-term. For pediatric patients in particular, long-term restriction can have negative health effects.13 Long-term dietary restrictions have been associated with nutrient deficiencies.14 In a study of patients with ulcerative colitis and Crohn’s disease, the rate of malnutrition was high, with high rates of deficiency in iron, calcium, vitamin B12, and vitamin D.14 One of the causes for malnutrition was a dietary adjustment based on the patient’s own experience or belief.14 The goal of the IFM Elimination Diet is to remove triggers and then return the patient to a wide and varied diet that provides adequate nutrition.

The IFM Elimination Diet has been found to be generally well tolerated, and most individuals have reported increased energy, mental alertness, a decrease in muscle or joint pain, and a general sense of improved well-being. IFM’s Elimination Diet is available to all members in the IFM Toolkit, along with a wealth of other resources, including the Food Reintroduction Symptom Tracker. This important tool helps practitioners and patients reintroduce only one new food at a time and assess the body’s response to that food by keeping track of symptoms. 

Learn more about inflammation, immune responses to food, and more at IFM’s GI Advanced Practice Module.


  1. Acker WW, Plasek JM, Blumenthal KG, et al. Prevalence of food allergies and intolerances documented in electronic health records. J Allergy Clin Immunol. 2017;140(6):1587-1591.e1. doi:10.1016/j.jaci.2017.04.006
  2. NIAID-Sponsored Expert Panel. Guidelines for the diagnosis and management of food allergy in the United States: report of the NIAID-sponsored expert panel. J Allergy Clin Immunol. 2010;126(6 Suppl):S1-S58. doi:10.1016/j.jaci.2010.10.007
  3. Jackson KD, Howie LD, Akinbami LJ. Trends in allergic conditions among children: United States, 1997-2011. NCHS Data Brief. 2013;(121):1-8.
  4. Lomer MC. Review article: the aetiology, diagnosis, mechanisms and clinical evidence for food intolerance. Aliment Pharmacol Ther. 2015;41(3):262-275. doi:10.1111/apt.13041
  5. Wood RA. Diagnostic elimination diets and oral food provocation. Chem Immunol Allergy. 2015;101:87-95. doi:10.1159/000371680
  6. Aydinlar EI, Dikmen PY, Tiffikci A, et al. IgG-based elimination diet in migraine plus irritable bowel syndrome. Headache. 2013;53(3):514-525. doi:10.1111/j.1526-4610.2012.02296.x
  7. Barmeyer C, Schumann M, Meyer T, et al. Long-term response to gluten-free diet as evidence for non-celiac wheat sensitivity in one third of patients with diarrhea-dominant and mixed-type irritable bowel syndrome. Int J Colorectal Dis. 2017;32(1):29-39. doi:10.1007/s00384-016-2663-x
  8. Mohajeri, Newman SA. Review of evidence for dietary influences on atopic dermatitis. Skin Therapy Lett. 2014;19(4):5-7.
  9. Kim J, Kwon J, Noh G, Lee SS. The effects of elimination diet on nutritional status in subjects with atopic dermatitis. Nutr Res Pract. 2013;7(6):488-494. doi:10.4162/nrp.2013.7.6.488
  10. Kim JE, Kim HJ, Lew BL, et al. Consensus guidelines for the treatment of atopic dermatitis in Korea (part I): general management and topical treatment. Ann Dermatol. 2015;27(5):563-577. doi:10.5021/ad.2015.27.5.563
  11. Kwon J, Kim J, Cho S, Noh G, Lee SS. Characterization of food allergies in patients with atopic dermatitis. Nutr Res Pract. 2013;7(2):115-121. doi:10.4162/nrp.2013.7.2.115
  12. Nosrati A, Afifi L, Danesh MJ, et al. Dietary modifications in atopic dermatitis: patient-reported outcomes. J Dermatolog Treat. 2017;28(6):523-538. doi:10.1080/09546634.2016.1278071
  13. Tait C, Goldman RD. Dietary exclusion for childhood atopic dermatitis. Can Fam Physician. 2015;61(7):609-611.
  14. Lim HS, Kim SK, Hong SJ. Food elimination diet and nutritional deficiency in patients with inflammatory bowel disease. Clin Nutr Res. 2018;7(1):48-55. doi:10.7762/cnr.2018.7.1.48

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